AFLP analysis shows high incongruence between genetic differentiation and morphology‐based taxonomy in a widely distributed tortoise

Morphology has traditionally been used to diagnose the taxa of various taxonomic ranks. However, there is growing evidence that morphology is not always able to reveal cryptic taxa, and that pronounced morphological variation could reflect phenotypic plasticity rather than evolutionary divergence. Spur‐thighed tortoises (the Testudo graeca complex), distributed in the western Palaearctic region, are characterized by high morphological variability and complicated taxonomy, which are under debate. Previous molecular studies using mainly mitochondrial DNA (mtDNA) sequences have revealed incongruence between genetic differentiation and morphology‐based taxonomy, suggesting that morphological variability is the result of phenotypic plasticity and stabilizing selection, which masks the true genealogies. In the present study, we used a range‐wide sampling and nuclear Amplified fragment length polymorphism (AFLP) markers to investigate genetic differentiation within the T. graeca complex. We found that spur‐thighed tortoises are differentiated into four geographically well‐defined AFLP groups: Balkans–Middle Eastern, western Mediterranean, Caucasian and central‐eastern Iranian. Compared with the distribution of mtDNA lineages, the groups are largely concordant, although the AFLP markers are less sensitive and distinguish fewer groups than do mtDNA sequences. The AFLP groups show an allopatric or parapatric distribution. The AFLP differentiation conflicts with the previously proposed morphology‐based taxonomy of the complex, suggesting that local adaptation to different environmental conditions may have led to the great extent of morphological variation within the same lineages. We propose a re‐evaluation of the taxa that were confirmed genetically using a thorough morphological analysis corrected for phenotypic plasticity. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ●● , ●●–●●.     

Agelacrinitid Edrioasteroidea (Echinodermata) from the Middle Devonian of the Eifel (Rhenish Massif, Germany)

The few isolated reports of agelacrinitid edrioasteroids (“Timeischytes”) from the Middle Devonian of the Eifel (Rhenish Massif, Germany) are revised. In this context, a specimen-rich but low-diversity edrioasteroid association is described from the threshold of the Eisen and Latistriatus Members of the Junkerberg Formation (Eifelian, Middle Devonian) of the Blankenheim Syncline. Predominantly, the autochthonously preserved edrioasteroids settled fixosessile-epibenthically on the frequent-occurring orthid brachiopod Schizophoria schnuri blankenheimensis and represent a wide spectrum of ontogenetic growth stages. They are associated with epibenthic brachiopods, microconchids, bryozoans, and auloporids—exemplifying synecological interactions. Roundish, shallow concavities with the shape and size of preserved adjacent edrioasteroids within encrusting colonies of the bryozoan Eostenopora clivosa are of special interest. It is suggested that the depressions represent former positions of the adjacent edrioasteroids. The new Bellastrella eifeliana n. gen. n. sp. is described, and genus Krama Bell, 1976 is reported from the Middle Devonian of Germany for the first time.     

Predictive mapping of Meadow Pipit density using integrated remote sensing data and an atlas of vascular plants dataset

Capsule The highest densities of Meadow Pipits in Central Europe are found in lowland and upland wet meadows.

Aims To create a large-scale predictive model of Meadow Pipit density.

Methods We analysed factors affecting the density of the Meadows Pipit in Poland using data from 777?×?1?km study plots and a set of 22 environmental variables, including agriculture intensification and habitat-specific plant species as classifiers of meadow types. Predictors were selected using variation inflation factor, then related to species density data using generalized additive models.

Results The best-supported model included 11 variables and was clearly better (Akaike information criterion weight?=?0.47) than other models. The density of the Meadow Pipit reaches its highest levels on large areas of extensively used wet meadows as well as pastures where livestock graze and which show high photosynthetic activity in April.

Conclusion Some aspects of the environment that were not identified from remote sensing data were vital for determining relatively high density. Conservation efforts for preserving Meadow Pipit populations should focus on maintaining wet meadows and extensively grazed pastures. Given the results, the Meadows Pipit may be classified as a good indicator of traditional agriculture.     

Nitrogen, organic carbon and sulphur cycling in terrestrial ecosystems: linking nitrogen saturation to carbon limitation of soil microbial processes

Elevated and chronic nitrogen (N) deposition to N-limited terrestrial ecosystems can lead to ‘N saturation’, with resultant ecosystem damage and leaching of nitrate (NO₃ ^?) to surface waters. Present-day N deposition, however, is often a poor predictor of NO₃ ^? leaching, and the pathway of the ecosystem transition from N-limited to N-saturated remains incompletely understood. The dynamics of N cycling are intimately linked to the associated carbon (C) and sulphur (S) cycles. We hypothesize that N saturation is associated with shifts in the microbial community, manifest by a decrease in the fungi-to-bacteria ratio and a transition from N to C limitation. Three mechanisms could lead to lower amount of bioavailable dissolved organic C (DOC) for the microbial community and to C limitation of N-rich systems: (1) Increased abundance of N for plant uptake, causing lower C allocation to plant roots; (2) chemical suppression of DOC solubility by soil acidification; and (3) enhanced mineralisation of DOC due to increased abundance of electron acceptors in the form of ${{\text{SO}}_{ 4}}^{ 2-}$ SO 4 2 ? and NO₃ ^? in anoxic soil micro-sites. Here we consider each of these mechanisms, the extent to which their hypothesised impacts are consistent with observations from intensively-monitored sites, and the potential to improve biogeochemical models by incorporating mechanistic links to the C and S cycles.     

The effect of 2-thiouracil on RNA synthesis in pollen tubesof Nicotiana alata

The level of RNA in pollen is approximately 20 mg g^-1 and remains constant during 6 h pollen germinationin vitro also in the presence of 2-thiouracil which stimulates pollen tube elongation. The synthesis of RNA in pollen tubes was investigated according to the incorporation of the label from uracil-2-¹⁴C, 2-thiouracil-2-¹⁴C, orotic acid-5-³H, fructose-U-¹⁴C and from³²PO₄ ^3- into RNA fractions separated by methylated albumine kieselguhr chromatography. The distribution of radioactivity on elution profiles was different according to the radioactivity source, however it was not changed by the presence of 2-thiouracil in cultivation medium. 2-Thiouracil incorporates into pollen tube RNA at about 50% the rate of uracil. It inhibited the incorporation of orotic acid, of fructose and of phosphate into all RNA fractions. It is suggested that the analogue inhibits the enzymes involved in RNA synthesis essentially as 2-thiouridine-5’-phosphate.     

Recovery from ethyl methanesulphonate-induced genetical damage in barley. Independence of sodium azide treatment

Barley seeds were treated for 3 h at 25°C with 240 mM ethyl methanesulphonate (EMS), washed for 18 h, treated with various concentrations of unbuffered sodium azide (pH 6.7–7.3) for 3 h at 25°C, re-dried to 30% water content and either sown immediately or stored at 25°C for 12 days and then sown. The synergistic action of sodium azide post-treatment has been demonstrated only for the EMS-induced M₁ germination reduction, while the EMS-induced M₁ sterility and the yield of M₂ chlorophyll mutants were unaffected. The ?storage” recovery from EMS-induced mutagenic effects was insensitive to sodium azide post-treatment. The 12 day-seed storage at 25°C brought about an improvement of M₁ germination, M₁ survival, M₁ fertility and a decrease in the amount of M₂ mutants, regardless of whether sodium azide post-treatment was applied or not.     

Bacterial periphyton of the Vltava River

Bacterial periphyton formed during 48 hours was studied by glass slide method and direct counting in Vltava River in Praha, Czechoslovakia. At water temperatures 8–11°C the numbers of rods ranged between 24,000 and 336,000 per 1 cm² and those of cocci between 30,000 and 228,000. The relation rods: cocci ranged between 0,9 and 2,4 with an average value of 1,7, whereas in a fishpond this average was 0,5. Among the periphyton 81,3% bacterial cells were active. The rods: cocci relation seems to be a good indicator of water pollution by organic matter, but numbers distinguishing the individual saprobic levels cannot be given yet.

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Zusammenfassung Es wurde der bakterielle Bewuchs von Glassplatten im Vltava-Fluss in Praha untersucht. Zweitägige Exposition erwies sich als am meisten geeignet, um den Bewuchs mikroskopisch durch direkte Zählung quantitativ zu erfassen. In Abhängigkeit von der Tiefe, Wassertemperatur, Verunreinigungsgrad, Sonnenstrahlung u.a. entwickelte sich der Bewuchs quantitativ unterschiedlich und zeigte auch eine unterschiedliche Relation von Stäbchen zu Kokken. Im beta-mesosaproben Bereich wurden im Herbst (Wassertemperaturen 8–11 °C) 24.000 bis 336.000 Stäbchen und 30.000 bis 228.000 Kokken per 1 cm² gefunden, mit den Mittelwerten 163.100 Stäbchen und 104.100 Kokken. Die Vergleichswerte von einem Fischteich in Motol lagen für Stäbchen im gleichen Bereich, während die Kokken, bis 254.000 erreichten.Die Relation Stäbchen: Kokken variierte im Vltava-Fluss zwischen 0,9 (nur einmal) und 2,4 mit dem Mittelwert 1,7, im Fischteich zwischen 0,4 ufnd 0,7 mit dem Mittelwert 0,5. Es hat sich erwiesen, dass diese Relation brauchbare Angaben über die organische Verunreinigung gibt. Leider liegen bisher zu wenige Ergebnisse vor, um eine Skale gegenüber den Saprobitätsstufen zu errichten.Unter den Bewuchsbakterien gab es in der Vltava durchschnittlich 81,3% aktive Zellen, wie durch Fluoreszenzanalyse festgestellt wurde.Fast alle Daten indizieren eine schwächere Verunreinigung des Wassers am linken Ufer als am rechten.